miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|86111307|gb|BB922516.1|BB922516 GTCTTTCTTCTTTGTCACATGCCAAAACTTCTATCAAGAAAACTACATTGAGACCCTTTGCATCTCTTAACTCTTCTTCT
TCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTCCTTTCATCACTCCAAT
TTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATTGTTGAGGGAGAAGGCCGACTTGA
AAGCCACAGCAGCTGAAAAGGTTGAACAAATAACAGCTCAACTTGGATCAGTTACAGCTCAAGCTGCAACACCATCATCA
TCTGATGGTATTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCATTCACTTCAAGAAAGAGAAATATGACAA
GAATCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAAAGCCCCCCGTATATGGTGTTTGCATGCTCAGACTCAAGAGTCT
GCCCATCTCATGTGCTAGATTTCCAGCCAGGAGAAGCTTTTGTAGTCAGAAATGTTGCTAACTTGGTTCCACCATATGAC
CAGGCAAAATATGCTGGAACTG




Most similar to sp|P17067|CAHC_PEA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score =  315 bits (807), Expect = 1e-85
 Identities = 164/195 (84%), Positives = 172/195 (88%), Gaps = 2/195 (1%)
 Frame = +3

Query: 3   LSSLSHAKTSIKKTTLRPF--ASLNXXXXXXXXTFPSLIQDKPVFASSSPFITPILREEM 176
           LSSLS AKTS K+TTLRPF  ASLN        TFPSLIQDKPVFASSSP ITP+LREEM
Sbjct: 11  LSSLSPAKTSTKRTTLRPFVSASLNTSSSSSSSTFPSLIQDKPVFASSSPIITPVLREEM 70

Query: 177 GKGYEEAIQELEKLLREKADLKATAAEKVEQITAQLGSVTAQAATPSSSDGIPTSEASER 356
           GKGY+EAI+EL+KLLREK +LKATAAEKVEQITAQLG       T SSSDGIP SEASER
Sbjct: 71  GKGYDEAIEELQKLLREKTELKATAAEKVEQITAQLG-------TTSSSDGIPKSEASER 123

Query: 357 IKTGFIHFKKEKYDKNPALYGELAKGQSPPYMVFACSDSRVCPSHVLDFQPGEAFVVRNV 536
           IKTGF+HFKKEKYDKNPALYGELAKGQSPP+MVFACSDSRVCPSHVLDFQPGEAFVVRNV
Sbjct: 124 IKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNV 183

Query: 537 ANLVPPYDQAKYAGT 581
           ANLVPPYDQAKYAGT
Sbjct: 184 ANLVPPYDQAKYAGT 198